[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 237 items for (author: nam & se)

EMDB-41363:
Cryo-EM structure of DDB1deltaB-DDA1-DCAF5
Method: single particle / : Yue H, Hunkeler M, Roy Burman SS, Fischer ES

PDB-8tl6:
Cryo-EM structure of DDB1deltaB-DDA1-DCAF5
Method: single particle / : Yue H, Hunkeler M, Roy Burman SS, Fischer ES

EMDB-19177:
Structure of the 55LCC ATPase complex
Method: single particle / : Foglizzo M, Degtjarik O, Zeqiraj E

PDB-8rhn:
Structure of the 55LCC ATPase complex
Method: single particle / : Foglizzo M, Degtjarik O, Zeqiraj E

EMDB-19477:
Saccharomyces cerevisiae FAS type I
Method: single particle / : Mann D, Grininger M, Ludig D, Sachse C

EMDB-19489:
Tobacco mosaic virus from scanning transmission electron microscopy at CSA=2.0 mrad
Method: helical / : Mann D, Filopoulou A, Sachse C

EMDB-15769:
A gap across the beta rings in 20S proteasome
Method: single particle / : Szenkier N, Arie M, Matzov D, Sertchook R, Carmeli R, Cascio P, Stanhill A, Shalev Benami M, Navon A

EMDB-15767:
Bovine 20S proteasome, untreated
Method: single particle / : Szenkier N, Arie M, Matzov D, Sertchook R, Carmeli R, Cascio P, Stanhill A, Shalev Benami M, Navon A

EMDB-15768:
Partially disassembled 20S proteasome upon disulfide bond formation.
Method: single particle / : Szenkier N, Arie M, Matzov D, Sertchook R, Carmeli R, Cascio P, Stanhill A, Shalev Benami M, Navon A

PDB-8azk:
Bovine 20S proteasome, untreated
Method: single particle / : Szenkier N, Arie M, Matzov D, Sertchook R, Carmeli R, Cascio P, Stanhill A, Shalev Benami M, Navon A

EMDB-35010:
Human Consensus Olfactory Receptor OR52c in Complex with Octanoic Acid (OCA) and G Protein
Method: single particle / : Choi CW, Bae J, Choi HJ, Kim J

EMDB-35770:
Human Consensus Olfactory Receptor OR52c in Complex with Octanoic Acid (OCA) and G Protein (Consensus map)
Method: single particle / : Choi CW, Bae J, Choi HJ

EMDB-35772:
Human Consensus Olfactory Receptor OR52c in Complex with Octanoic Acid (OCA) and G Protein (Receptor-focused map)
Method: single particle / : Choi CW, Bae J, Choi HJ

EMDB-35773:
Human Consensus Olfactory Receptor OR52c in Complex with Octanoic Acid (OCA) and G Protein (G protein-focused map)
Method: single particle / : Choi CW, Bae J, Choi HJ

EMDB-35971:
Human Consensus Olfactory Receptor OR52c in apo state, OR52c-bRIL
Method: single particle / : Choi CW, Bae J, Choi HJ, Kim J

EMDB-37336:
Human Consensus Olfactory Receptor OR52c in apo state, OR52c only
Method: single particle / : Choi CW, Bae J, Choi HJ, Kim J

PDB-8hti:
Human Consensus Olfactory Receptor OR52c in Complex with Octanoic Acid (OCA) and G Protein
Method: single particle / : Choi CW, Bae J, Choi HJ, Kim J

PDB-8j46:
Human Consensus Olfactory Receptor OR52c in apo state, OR52c-bRIL
Method: single particle / : Choi CW, Bae J, Choi HJ, Kim J

PDB-8w77:
Human Consensus Olfactory Receptor OR52c in apo state, OR52c only
Method: single particle / : Choi CW, Bae J, Choi HJ, Kim J

EMDB-34871:
Cryo-EM structure of biparatopic antibody Bp109-92 in complex with TNFR2
Method: single particle / : Akiba H, Fujita J, Ise T, Nishiyama K, Miyata T, Kato T, Namba K, Ohno H, Kamada H, Nagata S, Tsumoto K

PDB-8hlb:
Cryo-EM structure of biparatopic antibody Bp109-92 in complex with TNFR2
Method: single particle / : Akiba H, Fujita J, Ise T, Nishiyama K, Miyata T, Kato T, Namba K, Ohno H, Kamada H, Nagata S, Tsumoto K

EMDB-16015:
Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
Method: single particle / : Koziej L, Glatt S

EMDB-16029:
Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAm6A mRNA codon in the A-site after uncompleted di-peptide formation
Method: single particle / : Koziej L, Glatt S

EMDB-16031:
Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAA mRNA codon in the A-site after uncompleted di-peptide formation
Method: single particle / : Koziej L, Glatt S

EMDB-16047:
Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAm6A mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
Method: single particle / : Koziej L, Glatt S

EMDB-16057:
Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and Am6AA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
Method: single particle / : Koziej L, Glatt S

EMDB-16059:
Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and Am6AA mRNA codon in the A-site after uncompleted di-peptide formation
Method: single particle / : Koziej L, Glatt S

EMDB-16062:
Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and m6AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
Method: single particle / : Koziej L, Glatt S

EMDB-16065:
Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and m6AAA mRNA codon in the A-site after uncompleted di-peptide formation
Method: single particle / : Koziej L, Glatt S

EMDB-16081:
Initiation complex of the E. coli 70S ribosome with mRNA containing AAA codon in the A-site.
Method: single particle / : Koziej L, Glatt S

EMDB-16082:
Initiation complex of the E. coli 70S ribosome with mRNA containing AAm6A codon in the A-site
Method: single particle / : Koziej L, Glatt S

PDB-8bf7:
Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
Method: single particle / : Koziej L, Glatt S

PDB-8bge:
Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAm6A mRNA codon in the A-site after uncompleted di-peptide formation
Method: single particle / : Koziej L, Glatt S

PDB-8bgh:
Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAA mRNA codon in the A-site after uncompleted di-peptide formation
Method: single particle / : Koziej L, Glatt S

PDB-8bh4:
Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAm6A mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
Method: single particle / : Koziej L, Glatt S

PDB-8bhj:
Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and Am6AA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
Method: single particle / : Koziej L, Glatt S

PDB-8bhl:
Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and Am6AA mRNA codon in the A-site after uncompleted di-peptide formation
Method: single particle / : Koziej L, Glatt S

PDB-8bhn:
Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and m6AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
Method: single particle / : Koziej L, Glatt S

PDB-8bhp:
Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and m6AAA mRNA codon in the A-site after uncompleted di-peptide formation
Method: single particle / : Koziej L, Glatt S

PDB-8bil:
Initiation complex of the E. coli 70S ribosome with mRNA containing AAA codon in the A-site.
Method: single particle / : Koziej L, Glatt S

PDB-8bim:
Initiation complex of the E. coli 70S ribosome with mRNA containing AAm6A codon in the A-site
Method: single particle / : Koziej L, Glatt S

EMDB-27738:
Negative stain EM map of the heterodimeric p110gamma-p84 complex
Method: single particle / : Burke JE, Dalwadi U, Rathinaswamy MK, Yip CK, Nam SE

EMDB-27627:
Structure of p110 gamma bound to the Ras inhibitory nanobody NB7
Method: single particle / : Burke JE, Nam SE, Rathinaswamy MK, Yip CK

PDB-8dp0:
Structure of p110 gamma bound to the Ras inhibitory nanobody NB7
Method: single particle / : Burke JE, Nam SE, Rathinaswamy MK, Yip CK

EMDB-28869:
Composite map of CryoEM structure of Arabidopsis thaliana phytochrome A
Method: single particle / : Li H

EMDB-28870:
CryoEM structure of Arabidopsis thaliana phytochrome A (consensus map)
Method: single particle / : Li H

EMDB-28871:
CryoEM structure of Arabidopsis thaliana phytochrome A (focused map of platform)
Method: single particle / : Li H

EMDB-28872:
CryoEM structure of Arabidopsis thaliana phytochrome A (focused map of HKRD)
Method: single particle / : Li H

PDB-8f5z:
Composite map of CryoEM structure of Arabidopsis thaliana phytochrome A
Method: single particle / : Li H, Li H

EMDB-35625:
SARS-CoV-2 XBB.1 spike glycoprotein in complex with ACE2 (2-up state)
Method: single particle / : Anraku Y, Kita S, Yajima H, Sasaki J, Sasaki-Tabata K, Maenaka K, Hashiguchi T

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more